Geko Small Tree Of Life Clock, 30cm.

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Geko Small Tree Of Life Clock, 30cm.

Geko Small Tree Of Life Clock, 30cm.

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Price: £9.9
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Further information on experimental design is available in the Life Sciences Reporting Summary. Data availability

For the eukaryote tree ( fig. 4), the models with zero, one, two, three, four, and five rate shifts are rejected in favor of a model with six rate shifts ( P< 0.05) ( supplementary table S9, Supplementary Material online). A model with six rate shifts is not rejected in favor of a model with seven rate shifts ( P = 0.055). Six shifts are thus detected at 1, 11, 21, 121, 14,1 and 151 Ma ( supplementary table S10, Supplementary Material online). The parameters obtained for the 6 shifts model between 2,100 and 151 Ma (λ−μ = 0.00307 and μ/λ = 0.9581) were used to plot the confidence interval of the null distribution ( fig. 4). Szöllősi, G. J., Tannier, E., Daubin, V. & Boussau, B. The inference of gene trees with species trees. Syst. Biol. 64, e42–e62 (2015). Avise JC, Liu JX. On the temporal inconsistencies of Linnean taxonomic ranks. Biol J Linn Soc. 2011; 102(4):707–714. [ Google Scholar] Chauve, C. et al. MaxTiC: Fast ranking of a phylogenetic tree by maximum time consistency with lateral gene transfers. Preprint at https://www.biorxiv.org/content/early/2017/10/06/127548 (2017).

Timetree of Life (2009) Download (1,610 families)

A collection of sequences from several sources, including SwissProt, PIR, PRF, PDB, and translations from annotated coding regions in GenBank and RefSeq. A collection of information about biodiversity compiled collaboratively by hundreds of expert and amateur contributors. Sousa V, Hey J. Understanding the origin of species with genome-scale data: modelling gene flow. Nat Rev Genet. 2013; 14(6):404–414. [ PMC free article] [ PubMed] [ Google Scholar]

Szöllősi, G. J. & Daubin, V. Modeling gene family evolution and reconciling phylogenetic discord. Methods Mol. Biol. 856, 29–51 (2012). Knoll, A. H., Bergmann, K. D. & Strauss, J. V. Life: the first two billion years. Phil. Trans. R. Soc. B 371, 20150493 (2016). Doolittle, W. F. Phylogenetic classification and the Universal Tree. Science 284, 2124–2128 (1999). Coyne JA, Orr HA. Patterns of speciation in Drosophila. Evolution. 1989; 43(2):362–381. [ PubMed] [ Google Scholar] Gogarten, J. P., Murphey, R. D. & Olendzenski, L. Horizontal gene transfer: pitfalls and promises. Biol. Bull. 196, 359–362 (1999).Moen D, Morlon H. Why does diversification slow down? Trends Ecol Evol. 2014; 29(4):190–197. [ PubMed] [ Google Scholar] Huang, J., Xu, Y. & Gogarten, J. P. The presence of a haloarchaeal type tyrosyl-tRNA synthetase marks the opisthokonts as monophyletic. Mol. Biol. Evol. 22, 2142–2146 (2005). Smith SA, O'Meara BC. treePL: divergence time estimation using penalized likelihood for large phylogenies. Bioinformatics. 2012; 28(20):2689–2690. [ PubMed] [ Google Scholar] Tamura K, Battistuzzi FU, Billing-Ross P, Murillo O, Filipski A, Kumar S. Estimating divergence times in large molecular phylogenies. Proc Natl Acad Sci U S A. 2012; 109(47):19333–19338. [ PMC free article] [ PubMed] [ Google Scholar] Abby, S. S., Tannier, E., Gouy, M. & Daubin, V. Lateral gene transfer as a support for the tree of life. Proc. Natl Acad. Sci. USA 109, 4962–4967 (2012).



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